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Layman CA, Yeager LA, Post D, Bearhop S, Araujo MS, Boucek R, Harrison E, Jud ZR, Matich P, Hammerschlag-Peyer CM. Applying Stable Isotopes to Examine Food Web Structure: An Overview of Analytical Tools. Biological Reviews. 2012:DOI: 10.1111/j.1469-185X.2011.00208.x.\par \par Kara EL, Heimerl C, Killpack T, Van de Bogert MC, Yoshida H, Carpenter SR. Assessing a decade of phosphorus management in the Lake Mendota, Wisconsin watershed and scenarios for enhanced phosphorus management. Aquatic Sciences. 2012;74(2):241-253.\par \par Nilsson E, Solomon CT, Wilson KA, Willis TV, Larget B, Vander Zanden MJ. Effects of an invasive crayfish on benthic invertebrate abundance, fish benthivory and trophic position. Freshwater Biology. 2012;57(1):10?23.\par \par Thomsen MS, Silliman BR, Wernberg T, Engelen A, Tuya F, Vanderklift M, Holmer M, McGlathery KJ, Arenas F, Kotta J. Impacts of seaweeds on seagrasses: generalities and knowledge gaps. PLoS ONE. 2012;7(1):e28595.\par \par Raciti S, Neill C, Ollinger S, Peery BW, Quigley E, Sherman R, Thomas RQ, Vadeboncoeur TM, Weinstein D, Wilson G. Local scale carbon budgets and mitigation opportunities for the Northeastern United States.  2012;62:23-38.\par \par Heinrichs D, Lampis AM, Ling OG, Vogel JG, Aggarwal RM, Barton JM, Bharucha EM, Butsch CM, Fragkias MM, Johnston PM. Adapting cities to climate change: Opportunities and constraints. In: Yuen BG Cities and Climate Change: Responding to an Urgent Agenda. Cities and Climate Change: Responding to an Urgent Agenda. ; 2011. p. 193-224.\par \par Olden JD, Vander Zanden MJ, Johnson PTJ. Assessing ecosystem vulnerablity to invasive rusty crayfish (Orconectes rusticus). Ecological Applications. 2011;21(7):2587?2599.\par \par Vander Zanden MJ, Gratton C. Blowin' in the wind: reciprocal airborne carbon fluxes between lakes and land. Canadian Journal of Fisheries and Aquatic Sciences. 2011;68(1):170-182.\par \par Hardison AK, Canuel E, Tobias CR, Anderson I, Veuger B. Carbon and nitrogen dynamics in shallow photic systems: Interactions between macroalgae, microalgae, and bacteria. Limnology & Oceanography. 2011;56(4):1489-1503.\par \par Berka RM, Moisan M-C, Henrissat B, Coutinho PM, Lombard V, Natvig DO, Linquist E, Schmutz J, Lucas S, Harris P. Comparative genomic analysis of the thermophilic biomass-degrading fungi Myceliophthora thermophila and Thielavia terrestris.  2011;29.\par \par Sharma S, Vander Zanden MJ, Magnuson JJ, Lyons J. Comparing climate change and species invasions as drivers of coldwater fish population extripations. PLoS ONE. 2011;6(8):e22906.\par \par Mitchell MJ, Eimers MC, Fernandez I, Houle D, Jeffries DS, Likens GE, Moran MD, Rogers C, Schwede D, Shanley J. Comparisons of watershed sulfur budgets in southeast Canada and northeast US: new approaches and implications.  2011;103(1-3):181-207.\par \par Sercu B, Van De Werfhorst LC, Murray JLS, Holden PA. Cultivation-Independent Analysis of Bacteria in IDEXX Quanti-Tray/2000 Fecal Indicator Assays.  2011;77:627-633.\par \par Courtright EM, Van Zee JW. The database for inventory, monitoring, and assessment (DIMA).  [Internet]. 2011;33(4):21-26. Available from: bibliography/11-025.pdf\par \par Vallino JJ. Differences and implications in biogeochemistry from maximizing entropy production locally versus globally.  2011;2:69-85.\par \par Baddock MC, Zobeck TM, Van Pelt RS, Fredrickson EL. Dust emissions from undisturbed and disturbed, crusted playa surfaces: cattle trampling effects.  [Internet]. 2011;3:31-41. Available from: bibliography/11-008.pdf\par \par Vieillard A, Fulweiler RW, Hughes Z, Carey J. The ebb and flood of silica: Quantifying dissolved and biogenic silica fluxes from a temperate salt marsh.  2011;95:415-423.\par \par Lin C-C, Lu S-S, Hsiao C-W, Chang L-W, Jeng M-R, Kassim AR, Vanderbilt K, Henshaw D, Melendez-Colom EC, Porter JH. An ecoinformatics application for forest dynamics plot data management and sharing.  2011;26(4).\par \par Higgins SN, Vander Zanden MJ, Joppa LN, Vadeboncoeur Y. The effect of dreissenid invasions on chlorophyll and the chlorophyll: total phosphorus ratio in north-temperate lakes. Canadian Journal of Fisheries and Aquatic Sciences. 2011;68(2):319-329.\par \par Thomey ML, Collins SL, Vargas R, Johnson JE, Brown RF, Natvig DO, Friggens MT. Effect of precipitation variability on net primary production and soil respiration in a Chihuahuan Desert grassland.  2011;17:1505-1515.\par \par San Gil I, Vanderbilt KL, Harrington SA. Examples of ecological data synthesis driven by rich metadata, and practical guidelines to use the Ecological Metadata Language specification to this end.  2011;6.\par \par Schwilch G, Schuster B, Tabo R, Van Lynden G, Winslow M, Bestelmeyer B, Bunning S, Critchley W, Herrick J, Kellner K. Experiences in monitoring and assessment of sustainable land management.  2011;22(2):214-225.\par \par Vander Zanden MJ, Vadeboncoeur Y, Chandra S. Fish reliance on littoral-benthic resources and the distribution of primary production in lakes. Ecosystems. 2011;(6):894-903.\par \par Mora C, Brokovich E, Brooks AJ, Chabanet P, Cinner J, Cortes J, Cruz-Motta JJ, Magana AC, DeMartini E, Edgar GJ. Global human footprint on the linkage between buidiversity and ecosystem functioning in reef fishes.  2011;9(4):e1000606.\par \par Sala OE, Vivanco L, Flombaum P. Grassland ecosystems. In: Encyclopedia of Biodiversity. Encyclopedia of Biodiversity. ; 2011. p. .\par \par Racchetti E, Bartoli M, Soana E, Longhi D, Christian RR, Pinardi M, Viaroli P. Influence of hydrological connectivity of riverine wetlands on nitrogen removal via denitrification. Biogeochemistry [Internet]. 2011;103(1-3):335-354. Available from: DOI: 10.1007/s10533-010-9477-7\par \par Papes M, Sallstrom M, Asplund TR, Vander Zanden MJ. Invasive species research to meet the needs of resource management and planning. Conservation Biology. 2011;25(5):867-872.\par \par Young DR, Brantley ST, Zinnert JC, Vick JK. Landscape position and habitat polygons in a dynamic coastal barrier environment. Ecosphere [Internet]. 2011;2(6):Article 71. Available from: http://dx.doi.org/10.1890/ES10-00186.1\par \par Marczak L, Ho C-K, Vu H, Denno R, Pennings SC. Latitudinal variation in top-down and bottom-up control of a salt marsh food web. Ecology [Internet]. 2011;92:276-281. Available from: http://www.esajournals.org/doi/abs/10.1890/10-0760.1\par \par Michener WK, Porter JH, Servilla M, Vanderbilt K. Long term ecological research and information management. Ecological Informatics [Internet]. 2011;6(1):13. Available from: doi:10.1016/j.ecoinf.2010.11.005\par \par Preheim SP, Boucher Y, Woldschutte H, David LA, Veneziano D, Alm EJ, Polz MF. Metapopulation structure of Vibrionaceae among coastal marine invertebrates.  2011;13:265-275.\par \par Bowen JL, Ward BB, Morrison HG, Hobbie JE, Valiela I, Deegan LA, Sogin ML. Microbial community composition in salt marsh sediments resists perturbation by nutrient enrichment.  2011;5:1540-1548.\par \par Larsen L, McVoy C, Noe GB, Nungesser M, Rutchey K, Sklar FH, Troxler T, Volin JC, Willard DA, Aumen N. Recent and Historic Drivers of Landscape Change in the Everglades Ridge, Slough, and Tree Island Mosaic. Critical Reviews in Environmental Science and Technology. 2011;41:344-381.\par \par Rivera-Monroy VH, Delaune RD, Owens AB, Visser J, White JR, Twilley RR, Hernandez-Trejo H, Benitez JA. Removal of Physical Materials from Systems: Loss of Space, Area, and Habitats. In: McLusky DS Treatise on Estuarine and Coastal Science, Volume 8. Treatise on Estuarine and Coastal Science, Volume 8. ; 2011. p. 185-215.\par \par Voltz TJ. Riparian hydraulic gradient and water table dynamics in two steep headwater streams.  [Internet]. 2011. Available from: http://andrewsforest.oregonstate.edu/pubs/pdf/pub4717.pdf\par \par Vick JK, Young DR. Spatial variation in environment and physiological strategies for forb distribution on coastal dunes. Journal of Coastal Research. 2011;27:1113-1121.\par \par Carpenter SR, Stanley EH, Vander Zanden MJ. State of the world's freshwater ecosystems: Physical, chemical, and biological changes. Annual Review of Environment and Resources. 2011;36:75-99.\par \par Helton AM, Ashkenas LR, Cooper LW, Dodds WK, Gregory SV, Hall Jr. RO, Hamilton SK, Johnson SL, McDowell WH, Potter JD. Thinking outside the channel: modeling nitrogen cycling in networked river ecosystems. Frontiers in Ecology and the Environment [Internet]. 2011;9(4):229-238. Available from: http://andrewsforest.oregonstate.edu/pubs/pdf/pub4444.pdf\par \par Kasischke ES, Calef MP, Turetsky MR, Verbyla DL, Rupp TS, McGuire AD, Murphy KA, Jandt R, Barnes JL, Hoy EE. Alaska's changing fire regime - implications for the vulnerability of its boreal forests. Canadian Journal of Forest Research. 2010;40:1313-1324.\par \par Shochat E, Lerman S, Fernandez-Juricic E. Birds in urban ecosystems: Population dynamics, community structure, biodiversity, and conservation. In: Volder A Urban Ecosystem Ecology. Urban Ecosystem Ecology. ; 2010. p. 75-86.\par \par Parent M, Verbyla DL. The browning of Alaska's boreal forest. Remote Sensing. 2010;2:2729-2747.\par \par San Gil I, White M, Melendez-Colom EC, Vanderbilt KL. Case Studies of Ecological Integrative Information Systems: The Luquillo and Sevilleta Information Management Systems. In: Metadata and Semantic Research. Vol. 108. Metadata and Semantic Research. Heidelberg Berlin; 2010. p. 18-35.\par \par Nilsson C, Jansson R, Keskitalo E, Vlassova T, Sutinen M, Moen J, Chapin III FS. Challenges to adaptation in northernmost Europe as a result of global climate change. Ambio. 2010;39:81-84.\par \par Wu CH, Sercu B, Van De Werfhorst LC, Wong J, DeSantis TZ, Brodie EL, Hazen TC, Holden PA, Andersen GL. Characterization of coastal urban watershed bacterial communities leads to alternative community-based indicators.  2010;5:e11285.\par \par Leigh MB, Neufeld J, Taylor DL. Clone libraries of ribosomal RNA gene sequences for characterization of bacterial and fungal communities. In: V L Handbook of Hydrocarbon and Lipid Microbiology. Handbook of Hydrocarbon and Lipid Microbiology. Berlin; 2010. p. 3969-3993.\par \par Solomon CT, Olden JD, Johnson PTJ, Dillon RT, Vander Zanden MJ. Distribution and community-level effects of the Chinese mystery snail (Bellamya chinensis) in northern Wisconsin lakes. Biological Invasions. 2010;12:1591-1605.\par \par Gries C, San Gil I, Vaderbilt K, Garrit H. Drupal developments in the LTER network. LTER Databits. 2010;(Spring).\par \par Vallino JJ. Ecosystem biogeochemistry considered as a distributed metabolic network ordered by maximum entropy production. Philosophical Transactions of The Royal Society B. 2010;365:1417-1427.\par \par Christian RR, Camacho-Ibar V, Voss CM, Bondavalli C, Viaroli P, Naldi M, Tyler CA, Anderson I, McGlathery KJ, Ulanowicz RE. Ecosystem Health Indexed through Networks of Nitrogen Cycling. In: Paerl H Coastal Lagoons: Critical Habitats of Environmental Change. Coastal Lagoons: Critical Habitats of Environmental Change. Boca Raton, FL; 2010. p. 73-91.\par \par Butkas KJ, Vadeboncoeur Y, Vander Zanden MJ. Estimating benthic invertebrate production in lakes: a comparison of methods and scaling from individual taxa to the whole-lake level. Aquatic Sciences. 2010;73(1):153-169.\par \par Graham CB, van Verseveld WJ, Barnard HR, McDonnell JJ. Estimating the deep seepage component of the hillslope and catchment water balance within a measurement uncertainty framework. Hydrological Processes [Internet]. 2010;24:3631-3647. Available from: http://andrewsforest.oregonstate.edu/pubs/pdf/pub4718.pdf\par \par Hardison AK, Canuel EA, Anderson I, Veuger B. Fate of macroalgae in benthic systems: carbon and nitrogen cycling within the microbial community. Mar. Ecol. Prog. Ser. [Internet]. 2010;414:41-55. Available from: doi:10.3354/meps08720\par \par Herrick JE, Van Zee JW, Belnap J, Johansen JR. Fine gravel controls hydrologic and erodibility responses to trampling disturbance for coarse-textured soils with weak cyanobacterial crusts.  [Internet]. 2010;83:119-126. Available from: bibliography/10-032.pdf\par \par Dyrness CT, Van Cleve K, Yarie J. In Memoriam: Leslie A. Viereck. Arctic, Antarctic, and Alpine Research. 2010;42:236-237.\par \par Brainard RE, Hendee J, Hoeke RK, Holbrook SJ, Hoegh-Guldberg O, Lammers M, Manzello D, McManus M, Moffitt R, Monaco M. An international network of coral reef ecosystem observing systems (I-CREOS). In: Stammer D Proceedings of OceanObs?09: Sustained Ocean Observations and Information for Society. Vol. 2. Proceedings of OceanObs?09: Sustained Ocean Observations and Information for Society. Venice, Italy; 2010. p. .\par \par Bernot MJ, Dahm CN, Gregory SV, Grimm NB, Hamilton SK, Johnson SL, McDowell WH, Meyer JL, Peterson BV, Poole GC. Inter-regional comparison of land-use effects on stream metabolism. Freshwater Biology [Internet]. 2010;55:1874-1890. Available from: http://andrewsforest.oregonstate.edu/pubs/pdf/pub4587.pdf\par \par Staehr PA, Bade D, Van de Bogert MC, Koch G, Williamson C, Hanson P, Cole JJ, Kratz T. Lake metabolism and the diel oxygen technique: State of the science. Limnology and Oceanography: Methods. 2010;8:628-644.\par \par Yarie J, Van Cleve K. Long-term monitoring of climatic and nutritional effects on tree growth in interior Alaska. Canadian Journal of Forest Research. 2010;40:1325-1335.\par \par Vargas R, Pumpanen J, Tang J, Baldocchi DD, Allen MF, Bahn M, Black AT, Collins SL, Yuste JC, Hirano T. Looking deeper into the soil: biophysical controls and seasonal lags of soil CO2 production and efflux.  2010;20(6).\par \par Barnard HR, Graham CB, van Verseveld WJ, Brooks RJ, Bond BJ, McDonnell JJ. Mechanistic assessment of hillslope transpiration controls of diel subsurface flow: a steady-state irrigation approach. Ecohydrology [Internet]. 2010;3:133-142. Available from: http://andrewsforest.oregonstate.edu/pubs/pdf/pub4675.pdf\par \par Vaudo JJ, Matich P, Heithaus MR. Mother-offspring isotope fractionation in two species of placentatrophic sharks. Journal of Fish Biology. 2010;77(7):1724-1727.\par \par Vanderbilt KL, Su W, Blankman D, Guo X, He H, Lin C-C, Lu S-S, Ogawa A, Tuama EO, Schentz H. A multilingual metadata catalog for the ILTER: Issues and approaches.  2010;5:187-193.\par \par Van Horn D. Nutrient cycling in impacted stream ecosystems : from microbes to watersheds. Department of Biology. 2010:167.\par \par Freeman A, Zlotnicki V, Liu WT, Holt MB, Kwok R, Yueh S, Vazquez J, Siegel DA, Lagerloef G. Ocean Measurements from Space in 2025.  2010;23:144-161.\par \par Kucharik CJ, Serbin SP, Vavrus S, Hopkins EJ, Motew MM. Patterns of climate change across Wisconsin from 1950 to 2006. Physical Geography. 2010;31(1):1?28.\par \par Sih A, Bolnick DI, Luttbeg B, Orrock JL, Peacor SD, Pintor LM, Preisser E, Rehage JS, Vonesh JR. Predator-prey naivete', antipredator behavior, and the ecology of  predator invasions. Oikos. 2010;119(4):610-621.\par \par Boby L, Schuur EAG, Mack MC, Verbyla DL, Johnstone JF. Quantifying fire severity, carbon, and nitrogen emissions in Alaska's boreal forest. Ecological Applications. 2010;20:1633-1647.\par \par Millette TL, Argow B, Marcano E, Hayward C, Hopkinson C, Valentine V. Salt marsh geomorphological analyses via integration of multi-temporal multispectral remote sensing with LIDAR and GIS.  2010;26:809-816.\par \par Lee H, Schuur EAG, Vogel J. Soil CO2 production in upland tundra where permafrost is thawing. J. Geophys. Res. 2010;115:G01009.\par \par Burton PJ, Francis DA, Gauthier S, Hantula J, Bergeron Y, Bogdanski BE, Juday GP, Kuuluvainen T, McAfee BJ, Ogden A. Sustainability of boreal forests and forestry in a changing environment. In: Varjo J Forests and Society - Responding to Global Drivers of Change. Forests and Society - Responding to Global Drivers of Change. Vienna, Austria; 2010. p. 249-282.\par \par Kane ES, Hockaday WC, Turetsky MR, Masiello CA, Valentine DW, Finney B, Baldock JA. Topographic controls on black carbon accumulation in Alaskan black spruce forest soils: implications for organic matter dynamics. Biogeochemistry. 2010:39-56.\par \par Heithaus MR, Frid A, Vaudo JJ, Worm B, Wirsing AJ. Unraveling the ecological importance of elasmobranchs. In: Musick J The biology of sharks and their relatives II: Biodiversity, adaptive physiology, and conservation. The biology of sharks and their relatives II: Biodiversity, adaptive physiology, and conservation. Boca Raton, FL; 2010. p. 611-637.\par \par Heisler GM, Brazel AJ. The urban physical environment: Temperature and urban heat islands. In: Volder AJ Urban Ecosystem Ecology. Urban Ecosystem Ecology. ; 2010. p. 29-56.\par \par Lucero M, Dreesen DR, VanLeeuwen D. Using  hydrogel filled, embedded tubes to sustain grass transplants for arid land restoration.  [Internet]. 2010;74:987-990. 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Behavioural and growth differences between experienced and naive populations of a native crayfish in the presence of invasive rusty crayfish. Freshwater Biology. 2009;54:1876-1887.\par \par Thouin JA, Wollheim WM, Vorosmarty CJ, Jacobs J, McDowell WH. The biogeochemical influences of nitrate, dissolved oxygen, and dissolved organic carbon on stream nitrate uptake.  2009;28(4):894-907.\par \par Cahoon DR, Kunz D, Reed DJ, Kolker AS, Brinson MM, Stevenson JC, Riggs S, Christian RR, Reyes E, Voss C. Chapter 4.  Coastal wetland sustainability. In: Titus JG Coastal Sensitivity to Sea-Level Rise: A Focus on the Mid-Atlantic Region.  Synthesis and Assessment Product 4.1. Coastal Sensitivity to Sea-Level Rise: A Focus on the Mid-Atlantic Region.  Synthesis and Assessment Product 4.1. Washington, DC; 2009. p. 57-72.\par \par Cardille JA, Carpenter SR, Foley JA, Hanson PC, Turner MG, Vano JA. Climate perturbations and lakes: estimating sensitivities of water and carbon budgets. 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