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Hollibaugh JT, Gifford S, Sharma S, Bano N, Moran MA. Metatranscriptomic analysis of ammonia-oxidizing organisms in an estuarine bacterioplankton assemblage. ISME Journal [Internet]. 2011;5:866-878. Available from: http://www.nature.com/ismej/journal/vaop/ncurrent/abs/ismej2010172a.html\par \par Lyons JI, Alber M, Hollibaugh JT. Ascomycete fungal communities associated with early decay leaf blades of three Spartina species and a Spartina hybrid in the San Francisco Bay. Oecologica. [Internet]. 2010;162:435-442. Available from: http://www.springerlink.com/content/t7186704g8100t51/\par \par Caffrey JM, Hollibaugh JT, Bano N, Haskins J. Effects of upwelling on short term variability in microbial processes in estuarine sediments. Aquatic Microbial Ecology [Internet]. 2010;58:261-271. Available from: http://www.int-res.com/articles/ame_oa/a058p261.pdf\par \par First MR, Hollibaugh JT. Environmental Factors Shaping Microbial Community Structure in Salt Marsh Sediments. Marine Ecology Progress Series [Internet]. 2010;399:15-26. Available from: http://www.int-res.com/abstracts/meps/v399/p15-26/\par \par First MR, Park NY, Berrang ME, Meinersmann RJ, Bernhard JM, Gast RJ, Hollibaugh JT. Flow cytometric measurement of ingestion and digestion of bacteria by ciliates and recovery of a digestion-resistant Campylobacter jejuni. Applied and Environmental Microbiology. 2010.\par \par First MR, Hollibaugh JT. The model high molecular weight DOC compound, dextran, is ingested by the benthic ciliate, Uronema marinum, but does not supplement ciliate growth. Aquatic Microbial Ecology [Internet]. 2009;57:79-87. Available from: http://dx.doi.org/10.3354/ame01338\par \par Weston NB, Hollibaugh JT, Joye SB. Population growth away from the coastal zone: Thirty years of land use change and nutrient export from the Altamaha River, GA. Science of the Total Environment [Internet]. 2009;407:3347-3356. Available from: http://dx.doi.org/10.1016/j.scitotenv.2008.12.066\par \par Schaefer SC, Hollibaugh JT, Alber M. Watershed nitrogen input and riverine export on the west coast of the U.S. Biogeochemistry [Internet]. 2009;93(3):219-233. Available from: http://www.springerlink.com/content/n3813vng61jr4572/\par \par First MR, Hollibaugh JT. Protistan bacterivory and benthic microbial biomass in an intertidal creek mudflat. Marine Ecology Progress Series [Internet]. 2008;361:59-68. Available from: http://dx.doi.org/10.3354/meps07422\par \par Caffrey JM, Bano N, Kalanetra K, Hollibaugh JT. Ammonia oxidation and ammonia-oxidizing Bacteria and Archaea populations from estuaries with differing histories of hypoxia. ISME Journal. 2007;1:660-662.\par \par Poretsky RS, Bano N, Buchan A, LeCleir G, Kleikemper J, Pickering M, Pate WM, Moran MA, Hollibaugh JT. Analysis of microbial gene transcripts in environmental samples. Applied and Environmental Microbiology. 2005;71(7):4121-4126.\par \par Buchan A, Newell SY, Butler M, Biers EJ, Hollibaugh JT, Moran MA. Dynamics of bacterial and fungal communities on decaying salt marsh grass. Applied and Environmental Microbiology. 2003;69:6676-6687.\par \par }